mapped_reads_salmon QC

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        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411
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        About MultiQC

        This report was generated using MultiQC, version 1.28

        You can see a YouTube video describing how to use MultiQC reports here: https://youtu.be/qPbIlO_KWN0

        For more information about MultiQC, including other videos and extensive documentation, please visit http://multiqc.info

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        MultiQC is published in Bioinformatics:

        MultiQC: Summarize analysis results for multiple tools and samples in a single report
        Philip Ewels, Måns Magnusson, Sverker Lundin and Max Käller
        Bioinformatics (2016)
        doi: 10.1093/bioinformatics/btw354
        PMID: 27312411

        mapped_reads_salmon QC

        A modular tool to aggregate results from bioinformatics analyses across many samples into a single report.

        Report generated on 2025-05-28, 18:50 PDT based on data in: /Users/jeremy/Desktop/250518_yeast_anaerobic_v_aerobic_expression/mapped_reads_salmon

        General Statistics

        Showing 8/8 rows and 4/5 columns.
        Sample Name% AlignedM AlignedLibrary typesCFRM Bias
        mapped_reads_salmon | aerobic_r1 | aerobic_r1
        100.0%
        0.0
        mapped_reads_salmon | aerobic_r1 | aux_info | aerobic_r1
        83.9%
        6.1M
        		ISR
        mapped_reads_salmon | aerobic_r2 | aerobic_r2
        100.0%
        0.0
        mapped_reads_salmon | aerobic_r2 | aux_info | aerobic_r2
        83.9%
        6.1M
        		ISR
        mapped_reads_salmon | anaerobic_r1 | anaerobic_r1
        100.0%
        0.0
        mapped_reads_salmon | anaerobic_r1 | aux_info | anaerobic_r1
        82.2%
        5.0M
        		ISR
        mapped_reads_salmon | anaerobic_r2 | anaerobic_r2
        100.0%
        0.0
        mapped_reads_salmon | anaerobic_r2 | aux_info | anaerobic_r2
        82.1%
        5.0M
        		ISR

        Salmon

        Version: 1.10.3

        Quantifies expression of transcripts using RNA-seq data.URL: https://combine-lab.github.io/salmonDOI: 10.1038/nmeth.4197

        Created with MultiQC

        Software Versions

        Software Versions lists versions of software tools extracted from file contents.

        SoftwareVersion
        Salmon1.10.3

        MultiQC v1.28 - Written by Phil Ewels, available on GitHub.

        This report uses Plotly, jQuery, jQuery UI, Bootstrap and FileSaver.js.